mirror of
https://github.com/c-sooyoung/fold_slice.git
synced 2026-09-17 22:49:08 +09:00
78 lines
5.4 KiB
Matlab
78 lines
5.4 KiB
Matlab
import plotting.plot_radial_integ
|
||
import io.spec_read
|
||
|
||
scan_nr=565;
|
||
%backgroundscan=343;
|
||
|
||
base_path='~/Data10/';
|
||
eaccount=beamline.identify_eaccount;
|
||
%spec_data = spec_read(base_path,'ScanNr',scan_nr);
|
||
%transmission_data=mean(spec_data.diode);
|
||
datafile=sprintf('%sanalysis/radial_integration/%s_1_%05d_00000_00000_integ.mat',base_path,eaccount,scan_nr);
|
||
%backgroundfile=sprintf('%sanalysis/radial_integration/%s_1_%05d_00000_00000_integ.mat',base_path,eaccount,backgroundscan);
|
||
%spec_data_bgr = spec_read(base_path,'ScanNr',backgroundscan);
|
||
%transmission_bgr=mean(spec_data_bgr.diode);
|
||
%correction=transmission_data/transmission_bgr;
|
||
|
||
plot_radial_integ(...
|
||
datafile,...
|
||
'FigNo',102,... number of the figure for plotting the integrated intensities, default is 100
|
||
'NewFig',1,... open a new figure for each file, default is 0
|
||
'ClearFig',0,... clear the figure before plotting, default is 1
|
||
'XLog',1,... logarithmic scaling of the x-axis, default is 0
|
||
'YLog',1,... logarithmic scaling of the y-axis, default is 1
|
||
'PlotQ',0,... plot as a function of momentum transfer q rather than pixel no., default is 0
|
||
'PlotAngle',0,... plot as a function of the azimuthal angle rather than q or the radius, default is 0
|
||
'RadiusRange',[],... for azimuthal plots the intensity over this radius range is averaged, default is [] for all radii
|
||
'QMulPow',[],... multiply intensity with q to the power of this value, default is [ ] for no multiplication
|
||
'Inverse_nm',1,... plot q in inverse nm rather than inverse Angstroem, default is 0
|
||
'SegAvg',1,... average over angular segments rather than plotting them with different line colours, default is 1
|
||
'SegRange',[],... segment range to plot, default is [] for all segments
|
||
'LegendMulSeg',1,... show a legend in case of multiple segments being plotted, default is 1
|
||
'PointAvg',0,... plot the average of all intensity curves in the file, which typically means the average of a scan line, default is 1
|
||
'PointRange',[]);%,... %point range to plot, default is [] for all points in a file
|
||
%'BgrFilename',backgroundfile,... % background to subtract from each intensity profile, must have the same dimensions the data have
|
||
%'BgrScale',correction); % scaling factor to apply to the backgroubnd data, default is 1.000e+00
|
||
%'Axis',<[ x_from x_to y_from y_to ]> fixed scale for the plot
|
||
%'SleepTime',<seconds> wait time after each plot, default is 0.000
|
||
%'XLog',<0-no, 1-yes> logarithmic scaling of the x-axis, default is 0
|
||
%'YLog',<0-no, 1-yes> logarithmic scaling of the y-axis, default is 1
|
||
%'FilenameIntegMasks',<filename> Matlab file containing the integration masks, needed for normalization in case of averaging over radii, default is '~/Data10/analysis/data/pilatus_integration_masks.mat'
|
||
%'BgrFilename',<'filename'> background to subtract from each intensity profile, must have the same dimensions the data have
|
||
%'BgrScale',<value> scaling factor to apply to the backgroubnd data, default is 1.000e+00
|
||
%'BgrPoint',<integer> point to use from the file BgrFilename, default is 1, use [] to subtract 1:1
|
||
|
||
%*-----------------------------------------------------------------------*
|
||
%| |
|
||
%| Except where otherwise noted, this work is licensed under a |
|
||
%| Creative Commons Attribution-NonCommercial-ShareAlike 4.0 |
|
||
%| International (CC BY-NC-SA 4.0) license. |
|
||
%| |
|
||
%| Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch) |
|
||
%| |
|
||
%| Author: CXS group, PSI |
|
||
%*-----------------------------------------------------------------------*
|
||
% You may use this code with the following provisions:
|
||
%
|
||
% If the code is fully or partially redistributed, or rewritten in another
|
||
% computing language this notice should be included in the redistribution.
|
||
%
|
||
% If this code, or subfunctions or parts of it, is used for research in a
|
||
% publication or if it is fully or partially rewritten for another
|
||
% computing language the authors and institution should be acknowledged
|
||
% in written form in the publication: “Data processing was carried out
|
||
% using the “cSAXS matlab package” developed by the CXS group,
|
||
% Paul Scherrer Institut, Switzerland.”
|
||
% Variations on the latter text can be incorporated upon discussion with
|
||
% the CXS group if needed to more specifically reflect the use of the package
|
||
% for the published work.
|
||
%
|
||
% A publication that focuses on describing features, or parameters, that
|
||
% are already existing in the code should be first discussed with the
|
||
% authors.
|
||
%
|
||
% This code and subroutines are part of a continuous development, they
|
||
% are provided “as they are” without guarantees or liability on part
|
||
% of PSI or the authors. It is the user responsibility to ensure its
|
||
% proper use and the correctness of the results.
|