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https://github.com/c-sooyoung/fold_slice.git
synced 2026-09-17 22:59:07 +09:00
36 lines
1.3 KiB
Matlab
36 lines
1.3 KiB
Matlab
close all
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addpath(fullfile(pwd,'utils'))
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%% load a reconstruction
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disp('extracting sub-regions...')
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[oROI, oROI_vec, sub_px_shift] = find_reconstruction_ROI_external( outputs.probe_positions, size(object), size(probe(:,:,1,1)) );
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object_sub_regions = zeros(size(probe,1),size(probe,2),size(outputs.probe_positions,1));
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for i=1:size(object_sub_regions,3)
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object_sub_regions(:,:,i) = object(oROI_vec{i,:});
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end
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disp('extracting sub-regions...done')
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%% show in sub regions of object phase
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imagesc3D(angle(object_sub_regions))
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colormap gray
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axis image
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%% save sub regions
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disp('saving sub regions...')
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saveName = 'Niter1000_sub_regions_ph.hdf5';
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N = size(object_sub_regions,1);
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h5create(saveName, '/sub_recons_phase', size(object_sub_regions),'ChunkSize',[N N, 1],'Deflate',4)
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h5write(saveName, '/sub_recons_phase', angle(object_sub_regions))
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saveName = 'Niter1000_sub_regions_mag.hdf5';
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h5create(saveName, '/sub_recons_mag', size(object_sub_regions),'ChunkSize',[N N, 1],'Deflate',4)
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h5write(saveName, '/sub_recons_mag', abs(object_sub_regions))
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disp('saving sub regions...done')
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%%
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saveName = 'Niter1000_positions.hdf5';
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ppX = outputs.probe_positions(:,1)*p.dx_spec(1);
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ppY = outputs.probe_positions(:,2)*p.dx_spec(1);
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hdf5write(saveName, '/ppX', ppX)
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hdf5write(saveName, '/ppY', ppY,'WriteMode','append')
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hdf5write(saveName, '/dx', p.dx_spec(1),'WriteMode','append')
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