helper notebook for checking convergence; new TODO

TODO.md

@@ -1,8 +1,13 @@
-- tag publish version for Si reconstruction
+TODO:
+
 - Clean up BO states
+    - unify `BOEngine.__init__()`
 - BO train_x/y transfer between engines for single job
 - multi-GPU dispatcher
 - template job sequences / yamls
+    - mobo
 - metric() function(s) for each ptycho engine
+    - FRC score
 - fold_slice: load diffractions / hdf5 files; change only param per job
-    - Possibly restructure PtychoEngine.__init__() to load data but not params
+    - restructure `FoldSlicePtychoEngine.__init__()` to load data but not params
+        - write new `prepare_data.m`