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76 lines
3.4 KiB
Matlab
76 lines
3.4 KiB
Matlab
% SAVE_TOMOGRAM simple function to save data as tiff images
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% save current tomogram
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%
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% save_tomogram(tomogram, par, type, circulo,theta, extra_string = '')
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%
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% Inputs:
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% **tomogram - (3D array) saved volume
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% **par - tomo parameter structure
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% **type - 'delta', 'beta'
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% **circulo, theta - other inputs to be saved
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% **extra_string - extra string in the name, default == ''
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%*-----------------------------------------------------------------------*
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%| |
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%| Except where otherwise noted, this work is licensed under a |
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%| Creative Commons Attribution-NonCommercial-ShareAlike 4.0 |
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%| International (CC BY-NC-SA 4.0) license. |
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%| |
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%| Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch) |
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%| |
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%| Author: CXS group, PSI |
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%*-----------------------------------------------------------------------*
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% You may use this code with the following provisions:
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%
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% If the code is fully or partially redistributed, or rewritten in another
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% computing language this notice should be included in the redistribution.
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%
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% If this code, or subfunctions or parts of it, is used for research in a
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% publication or if it is fully or partially rewritten for another
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% computing language the authors and institution should be acknowledged
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% in written form in the publication: “Data processing was carried out
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% using the “cSAXS matlab package” developed by the CXS group,
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% Paul Scherrer Institut, Switzerland.”
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% Variations on the latter text can be incorporated upon discussion with
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% the CXS group if needed to more specifically reflect the use of the package
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% for the published work.
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%
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% A publication that focuses on describing features, or parameters, that
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% are already existing in the code should be first discussed with the
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% authors.
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%
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% This code and subroutines are part of a continuous development, they
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% are provided “as they are” without guarantees or liability on part
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% of PSI or the authors. It is the user responsibility to ensure its
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% proper use and the correctness of the results.
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function save_tomogram(tomogram, par, type, circulo,theta, extra_string)
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% save current tomogram
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% type: 'delta', 'beta', ''
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if nargin < 6
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extra_string = '';
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end
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if ~exist(par.output_folder,'dir')
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mkdir(par.output_folder);
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end
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saveprojfile = fullfile(sprintf('%s/tomogram_%s_%s_%s.mat',par.output_folder,type,par.scans_string, extra_string));
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switch type
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case 'delta'
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tomogram_delta = tomogram;
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case 'beta'
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tomogram_beta = tomogram;
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otherwise
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error('Allowed types: "delta", "beta"')
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end
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utils.verbose(0, 'Saving tomogram ....')
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utils.savefast_safe(saveprojfile,['tomogram_',type],'par','circulo', 'theta', par.force_overwrite);
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utils.verbose(0, 'Saving done')
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end
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