fold_slice

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XXXXX Copy matlab scripts to /fold_slice/ptycho/ before use XXXXX
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Note: in run_multislice_Planar_Interface, addpath(core.find_base_package) this works as intended on linux but if trying to run fold_slice on PC or iOS, need to manually add the path to the parent folder through the Matlab GUI

The folder named 'Planar_Interface' contains scripts relevant to the publication '3D Atomic-Scale Metrology of Strain Relaxation and Roughness in Gate-All-Around (GAA) Transistors via Electron Ptychography' (https://doi.org/10.48550/arXiv.2507.07265)

Other folders collect sample scripts for previous publications.

1. MoSe2_nat_comm:
Single-slice electron ptychography on an experimental data of bilayer MoSe2. Published in
Chen, Z., Odstrcil, M., Jiang, Y. et al. Mixed-state electron ptychography enables sub-angstrom resolution imaging with picometer precision at low dose. Nat Commun 11, 2994 (2020). https://doi.org/10.1038/s41467-020-16688-6

2. PSO_science:
Multislice electron ptychography on an experimental data of thick PSO. Published in
Zhen Chen et al. ,Electron ptychography achieves atomic-resolution limits set by lattice vibrations.Science372,826-831(2021).DOI:10.1126/science.abg2533

3. MoS2_sci_rep:
Automatic parameter optimization for simulated bilayer MoS2 structure. Published in
Cao, M.C., Chen, Z., Jiang, Y. et al. Automatic parameter selection for electron ptychography via Bayesian optimization. Sci Rep 12, 12284 (2022). https://doi.org/10.1038/s41598-022-16041-5

4. NNO:
Electron ptychography reveals a ferroelectricity dominated by anion displacements. Published in KP, H., Xu, R., Patel, K. et al. Electron ptychography reveals a ferroelectricity dominated by anion displacements. Nat. Mater. (2025). https://doi.org/10.1038/s41563-025-02205-x