mirror of
https://github.com/c-sooyoung/fold_slice.git
synced 2026-09-17 17:29:09 +09:00
79 lines
2.7 KiB
Matlab
79 lines
2.7 KiB
Matlab
function [ ] = imExportTiff( matrix_input,name,section,varargin)
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%Wirte a image stack as a 'Tiff' file
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%imExportTiff( matrix,name,section )
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% matrix: 3D matrix(y,x,z)
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% name: output file name
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% section: choose corss sections
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% 'XY' matrix(:,:,i)
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% 'YZ' matrix(:,i,:)
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% 'ZX' matrix(i,:,:)
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%
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matrix = matrix_input;
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matrix = matrix-min(min(min(matrix)));
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s = size(matrix);
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m = double(max(max(max(matrix))));
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if isempty(varargin) %gray
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switch section
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case 'XY'
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imwrite(double(matrix(:,:,1))./m, name,'tiff')
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for i=2:s(3)
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imwrite(double(matrix(:,:,i))./m, name,'tiff', 'WriteMode','append')
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end
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case 'ZY'
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imwrite(double(squeeze(matrix(:,1,:))./m), name,'tiff')
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for i=2:s(2)
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imwrite(double(squeeze(matrix(:,i,:))./m), name,'tiff', 'WriteMode','append')
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end
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case 'ZYs'
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imwrite(mat2gray(double(squeeze(matrix(:,1,:)))), name,'tiff')
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for i=2:s(2)
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imwrite(mat2gray(double(squeeze(matrix(:,i,:)))), name,'tiff', 'WriteMode','append')
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end
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case 'ZX'
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imwrite(double(squeeze(matrix(1,:,:)))./m, name,'tiff')
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for i=2:s(1)
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imwrite(double(squeeze(matrix(i,:,:)))./m, name,'tiff', 'WriteMode','append')
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end
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case 'XYs'
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imwrite(mat2gray(matrix(:,:,1)), name,'tiff')
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for i=2:s(3)
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imwrite(mat2gray(matrix(:,:,i)), name,'tiff', 'WriteMode','append')
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end
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case 'ZXs'
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imwrite(squeeze(matrix(1,:,:))./m, name,'tiff')
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for i=2:s(1)
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imwrite(mat2gray(squeeze(matrix(i,:,:))), name,'tiff', 'WriteMode','append')
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end
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end
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else
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a = varargin{1}; %color
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switch section
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case 'XY'
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imwrite(double(matrix(:,:,1))*a*64/m,jet, name,'tiff')
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for i=2:s(3)
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imwrite(double(matrix(:,:,i))*a*64/m,jet, name,'tiff', 'WriteMode','append')
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end
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case 'ZY'
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imwrite(squeeze(matrix(:,1,:))*a*64/m,jet, name,'tiff')
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for i=2:s(2)
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imwrite(squeeze(matrix(:,i,:))*a*64/m,jet, name,'tiff', 'WriteMode','append')
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end
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case 'ZX'
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imwrite(squeeze(matrix(1,:,:))*a*64/m,jet, name,'tiff')
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for i=2:s(1)
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imwrite(squeeze(matrix(i,:,:))*a*64/m,jet, name,'tiff', 'WriteMode','append')
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end
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case 'XYs'
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imwrite(mat2gray(matrix(:,:,1))*a*64,parula, name,'tiff')
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for i=2:s(3)
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imwrite(mat2gray(matrix(:,:,i))*a*64,parula, name,'tiff', 'WriteMode','append')
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end
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end
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end
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end
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