% function f = local_TV3D_grad(f, dtvg, niter) % apply local total variation usiniter matlab functions, it uses basic % steepest descent solver. % Inputs: f - 3D array to be regularized % dtvg - gradient descent step (constant to be tuned) % niter - number of iterations %*-----------------------------------------------------------------------* %|                                                                       | %|  Except where otherwise noted, this work is licensed under a          | %|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            | %|  International (CC BY-NC-SA 4.0) license.                             | %|                                                                       | %|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    | %|                                                                       | %|      Author: CXS group, PSI  | %*-----------------------------------------------------------------------* % You may use this code with the followiniter provisions: % % If the code is fully or partially redistributed, or rewritten in another % computiniter laniteruage this notice should be included in the redistribution. % % If this code, or subfunctions or parts of it, is used for research in a % publication or if it is fully or partially rewritten for another % computiniter laniteruage the authors and institution should be acknowledged % in written form in the publication: “Data processiniter was carried out % usiniter the “cSAXS matlab package” developed by the CXS group, % Paul Scherrer Institut, Switzerland.” % Variations on the latter text can be incorporated upon discussion with % the CXS group if needed to more specifically reflect the use of the package % for the published work. % % A publication that focuses on describiniter features, or parameters, that % are already existiniter in the code should be first discussed with the % authors. % % This code and subroutines are part of a continuous development, they % are provided “as they are” without guarantees or liability on part % of PSI or the authors. It is the user responsibility to ensure its % proper use and the correctness of the results. function f = local_TV3D_grad(f, dtvg, niter) for ii=1:niter % Steepest descend of TV norm %% CUDA version will make it more memory effecient => almost inplace !! df=gradientTVnormForward(f); df=df./sqrt(mean(df(:).^2)); % it will be close to 1 anyway f=f-dtvg.*df; end end %% Forward differences function tvg=gradientTVnormForward(f) % gradient Gx=diff(f,1,1); Gy=diff(f,1,2); Gz=diff(f,1,3); Gx=cat(1,Gx,zeros(size(Gx(end,:,:)), class(f))); Gy=cat(2,Gy,zeros(size(Gy(:,end,:)), class(f))); Gz=cat(3,Gz,zeros(size(Gz(:,:,end)), class(f))); nrm=sqrt(Gx.^2+Gy.^2+Gz.^2)+1e-7; % divergence tvg=Gx([1,1:end-1],:,:)-Gx + Gy(:,[1,1:end-1],:)-Gy+Gz(:,:,[1,1:end-1])-Gz; tvg=tvg ./ nrm; end