% Call function without arguments for a detailed explanation of its use % Filename: $RCSfile: compile_x12sa_filename.m,v $ % % $Revision: 1.10 $ $Date: 2012/08/07 16:39:07 $ % $Author: $ % $Tag: $ % % Description: % plot a STXM scan % % Note: % Call without arguments for a brief help text. % % Dependencies: % - image_read % % history: % % October 9th 2009: % remove BurstScan parameter, add DetectorNumber and SubExpWildcard % parameter % % August 5th 2009: % return just the directory in case of a negative point number % % September 5th 2009: % 1st version %*-----------------------------------------------------------------------* %|                                                                       | %|  Except where otherwise noted, this work is licensed under a          | %|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            | %|  International (CC BY-NC-SA 4.0) license.                             | %|                                                                       | %|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    | %|                                                                       | %|      Author: CXS group, PSI  | %*-----------------------------------------------------------------------* % You may use this code with the following provisions: % % If the code is fully or partially redistributed, or rewritten in another % computing language this notice should be included in the redistribution. % % If this code, or subfunctions or parts of it, is used for research in a % publication or if it is fully or partially rewritten for another % computing language the authors and institution should be acknowledged % in written form in the publication: “Data processing was carried out % using the “cSAXS matlab package” developed by the CXS group, % Paul Scherrer Institut, Switzerland.” % Variations on the latter text can be incorporated upon discussion with % the CXS group if needed to more specifically reflect the use of the package % for the published work. % % A publication that focuses on describing features, or parameters, that % are already existing in the code should be first discussed with the % authors. % % This code and subroutines are part of a continuous development, they % are provided “as they are” without guarantees or liability on part % of PSI or the authors. It is the user responsibility to ensure its % proper use and the correctness of the results. function [ filename, vararg_remain ] = compile_x12sa_filename(scan_no,point_no,varargin) import beamline.identify_eaccount import io.image_read import utils.identify_system import utils.compile_x12sa_dirname % set default values sys_id = identify_system(); switch sys_id case 'X12SA' base_path = '~/Data10/pilatus_1/'; case 'CXS compute node' base_path = '/afs/psi.ch/project/cxs/'; otherwise base_path = ''; end % base name, default starts with the current user name base_name = identify_eaccount(); if (isempty(base_name)) base_name = 'image_'; else base_name = [ base_name '_' ]; end add_scan_dir = 1; sub_exp_no = 0; point_wildcard = 0; subexp_wildcard = 0; detector_number = 1; file_extension = 'cbf'; % exit with an error message if unhandled named parameters are left at the % end of this macro if (nargout > 1) unhandled_par_error = 0; else unhandled_par_error = 1; end % check minimum number of input arguments if (nargin < 2) fprintf('Usage:\n') fprintf('[filename]=%s(scan_no,point_no, [,,] ...]);\n',... mfilename); fprintf('The optional , pairs are:\n'); fprintf('''BasePath'',<''path''> default is ''%s'', the scan directory is added\n',base_path); fprintf('''AddScanDir'',<0-no,1-yes> add the scan number specific directory part, default is %d\n',add_scan_dir); fprintf('''BaseName'',<''name''> default is ''%s''\n',base_name); fprintf('''FileExtension'',<''extension''> default is ''%s''\n',file_extension); fprintf('''SubExpNo'', sub exposure number at the end of the file name (not in burst mode), default is %d\n',sub_exp_no); fprintf('''DetectorNumber'',<1-Pilatus 2M, 2-Pilatus 300k, 3-Pilatus 100k>\n'); fprintf(' specifies the detector, default is %d\n',detector_number); fprintf('''PointWildcard'',<0-no,1-yes> return a * for the point number in the filename, default is %d\n',point_wildcard); fprintf('''SubExpWildcard'',<0-no,1-yes> return a * for the sub-exposure number in the filename, default is %d\n',subexp_wildcard); fprintf('If a negative point number is specified then just the directory is returned.\n'); fprintf('\n'); error('At least the scan and point number have to be specified as input parameter.'); end % accept cell array with name/value pairs as well no_of_in_arg = nargin; if (nargin == 3) if (isempty(varargin)) % ignore empty cell array no_of_in_arg = no_of_in_arg -1; else if (iscell(varargin{1})) % use a filled one given as first and only variable parameter varargin = varargin{1}; no_of_in_arg = 2 + length(varargin); end end end % check number of input arguments if (rem(no_of_in_arg,2) ~= 0) error('The optional parameters have to be specified as ''name'',''value'' pairs'); end % parse the variable input arguments vararg_remain = cell(0,0); for ind = 1:2:length(varargin) name = varargin{ind}; value = varargin{ind+1}; switch name case 'BasePath' base_path = value; case 'BaseName' base_name = value; case 'FileExtension' file_extension = value; case 'DetectorNumber' detector_number = value; if ((detector_number ~= 1) && (strcmp(base_path,'~/Data10/pilatus_1/'))) base_path = sprintf('~/Data10/pilatus_%d/',detector_number); end case 'AddScanDir' add_scan_dir = value; case 'SubExpNo' sub_exp_no = value; case 'PointWildcard' point_wildcard = value; case 'SubExpWildcard' subexp_wildcard = value; case 'UnhandledParError' unhandled_par_error = value; otherwise vararg_remain{end+1} = name; %#ok vararg_remain{end+1} = value; %#ok end end % exit in case of unhandled named parameters, if this has not been switched % off if ((unhandled_par_error) && (~isempty(vararg_remain))) vararg_remain %#ok error('Not all named parameters have been handled.'); end % add the detector number to the base name base_name = [ base_name num2str(detector_number) '_' ]; % compile the name of the automatically created scan directory if (add_scan_dir) scan_dir = compile_x12sa_dirname(scan_no); else scan_dir = ''; end % compile path and filename if (point_no < 0) % just the directory without a file name filename = fullfile(base_path,scan_dir); else filename = fullfile(base_path,scan_dir,sprintf('%s%05d_',base_name,scan_no)); if (point_wildcard) filename = sprintf('%s*_',filename); else filename = sprintf('%s%05d_',filename,point_no); end if (subexp_wildcard) filename = sprintf('%s*.%s',filename,file_extension); else filename = sprintf('%s%05d.%s',filename,sub_exp_no,file_extension); end end