function ellipse_fit_positions(samposx,samposy,scans,lamni_fit_file,bath_path) % addpath ../ % % cf{1} = load('Claire_click_squarymcsquareface.mat'); % samposx_all = []; % samposy_all = []; % scans_all = []; % for ii = 1:numel(cf) % samposx_all = [samposx_all cf{ii}.samposx]; % samposy_all = [samposy_all cf{ii}.samposy]; % scans_all = [scans_all cf{ii}.scans]; % end figure(1); clf plot(samposx,samposy,'o') %% if exist('lamni_fit_file') [~,lamni_name,~] = fileparts(lamni_fit_file); %theta = prepare.read_angles_from_position_files('~/specES1/scan_positions/scan_%05d.dat',scans); theta = prepare.read_angles_from_position_files(strcat(bath_path,'/scan_positions/scan_%05d.dat'),scans); theta_interp = [min(theta)-1:max(theta)+1]; samposx_interp = interp1(theta,samposx,theta_interp,'spline'); samposy_interp = interp1(theta,samposy,theta_interp,'spline'); hold on plot(samposx_interp, samposy_interp,'--') hold off corr_filename = sprintf('correction_lamni_um_S%05d_%s.txt',scans(1),lamni_name); h = fopen(corr_filename,'w'); fprintf(h,'corr_elements = %d \n',length(theta_interp)); for ii = 1:length(samposx_interp) fprintf(h,'%s[%d] = %.6f \n','corr_angle',ii-1,theta_interp(ii)); fprintf(h,'%s[%d] = %.6f \n','corr_pos_x',ii-1, samposx_interp(ii)); fprintf(h,'%s[%d] = %.6f \n','corr_pos_y',ii-1, samposy_interp(ii)); end fclose(h); fprintf('Wrote succesfully to %s\n',corr_filename) end