% FFT2_PARTIAL apply fftn only on smaller blocks (important for GPU) % % x = fft2_partial(x,split) % % Inputs: % **x - input array % *optional* % **split - number of blocks to split the array before FFT to save the memory % % *returns* % ++x fft2 transformed array %*-----------------------------------------------------------------------* %|                                                                       | %|  Except where otherwise noted, this work is licensed under a          | %|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            | %|  International (CC BY-NC-SA 4.0) license.                             | %|                                                                       | %|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    | %|                                                                       | %|      Author: CXS group, PSI  | %*-----------------------------------------------------------------------* % You may use this code with the following provisions: % % If the code is fully or partially redistributed, or rewritten in another % computing language this notice should be included in the redistribution. % % If this code, or subfunctions or parts of it, is used for research in a % publication or if it is fully or partially rewritten for another % computing language the authors and institution should be acknowledged % in written form in the publication: “Data processing was carried out % using the “cSAXS matlab package” developed by the CXS group, % Paul Scherrer Institut, Switzerland.” % Variations on the latter text can be incorporated upon discussion with % the CXS group if needed to more specifically reflect the use of the package % for the published work. % % A publication that focuses on describing features, or parameters, that % are already existing in the code should be first discussed with the % authors. % % This code and subroutines are part of a continuous development, they % are provided “as they are” without guarantees or liability on part % of PSI or the authors. It is the user responsibility to ensure its % proper use and the correctness of the results. function x = fft2_partial(x,split, inverse) if nargin < 3 inverse = false; end if nargin < 2 || isempty(split) %% empirical condition assuming FFT involved, may be too pesimistic %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% mem_req = numel(x)*8 * log2(max(size(x,1),size(x,2))); %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% if isa(x,'gpuArray') x = complex(x); % move directly to complex to include the expected memore requirements gpu = gpuDevice; split = ceil(mem_req / gpu.AvailableMemory); else if mem_req < 50e9 % assume to have at least 50GB ram free ... split = 1; else avail_mem = utils.check_available_memory * 1e6; split = ceil(mem_req /avail_mem); end end end if any(split > 1) Ndims = ndims(x); for ax = 1:2 x = math.fft_partial(x,ax,1+mod(ax+1,Ndims), split, inverse); end else if ~inverse x = fft2(x); else x = ifft2(x); end end end