% ASTRA_FIND_OPTIMAL_SPLIT Find optimal split of data and make the blocks sufficiently small for % limited GPU memory % % split = ASTRA_find_optimal_split(cfg, num_gpu, angle_blocks, propagator) % % Inputs: % **cfg - config structure generated by ASTRA_initialize % **num_gpu - number of gpu to split the data % **angle_blocks - number of angular blocks (ie in SART method or FSC) % **propagator - which propagator should be assumed : FWD, BACK, both (default) % Outputs: % ++split - volume / angle split - [split_x,split_y,split_z,split_angles] %*-----------------------------------------------------------------------* %|                                                                       | %|  Except where otherwise noted, this work is licensed under a          | %|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            | %|  International (CC BY-NC-SA 4.0) license.                             | %|                                                                       | %|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    | %|                                                                       | %|      Author: CXS group, PSI  | %*-----------------------------------------------------------------------* % You may use this code with the following provisions: % % If the code is fully or partially redistributed, or rewritten in another % computing language this notice should be included in the redistribution. % % If this code, or subfunctions or parts of it, is used for research in a % publication or if it is fully or partially rewritten for another % computing language the authors and institution should be acknowledged % in written form in the publication: “Data processing was carried out % using the “cSAXS matlab package” developed by the CXS group, % Paul Scherrer Institut, Switzerland.” % Variations on the latter text can be incorporated upon discussion with % the CXS group if needed to more specifically reflect the use of the package % for the published work. % % A publication that focuses on describing features, or parameters, that % are already existing in the code should be first discussed with the % authors. % % This code and subroutines are part of a continuous development, they % are provided “as they are” without guarantees or liability on part % of PSI or the authors. It is the user responsibility to ensure its % proper use and the correctness of the results. function split = ASTRA_find_optimal_split(cfg, num_gpu, angle_blocks, propagator) if gpuDeviceCount == 0 split = 1; return end gpu = gpuDevice; if nargin < 2 || num_gpu == 0 num_gpu = 1; end if nargin < 3 angle_blocks = 1; end if nargin < 4 propagator = 'both'; end Nangles = cfg.iProjAngles / angle_blocks; if isfield(cfg, 'Grouping') Nangles = min(Nangles, cfg.Grouping); end split = [1,1,1]; if ismember(lower(propagator), {'fwd','both'}) split = max(split, ceil([cfg.iVolX, cfg.iVolY, cfg.iVolZ] / 4096 )); % texture memory limit split = max(split, [1,1,ceil( (cfg.iVolX*cfg.iVolY*cfg.iVolZ*4) / 1.024e9 / prod(split)/num_gpu)]); % texture memory limit end split = max(split, [1,1,split(3)*ceil( ((cfg.iVolX*cfg.iVolY*cfg.iVolZ*4)/ prod(split)/num_gpu) / (gpu.AvailableMemory/2 - min(1.1e9, cfg.iVolX*cfg.iVolY*cfg.iVolZ*4)) )]); % gpu memory limit split = max(split, [1,1,split(3)*ceil( ((cfg.iVolX*cfg.iVolY*cfg.iVolZ )/ prod(split)/num_gpu) / double(intmax('int32')) )]); % maximal array on GPU limit if ismember(lower(propagator), {'back','both'}) % if projection would be larger than 4096x4096 -> split the reconstruction volume split = max(split, [cfg.iProjU, cfg.iProjU, cfg.iProjV]/4096 ); % texture memory limit end % projection size limitation + astra allows only < 1024 angles split(4) = max(ceil(Nangles/1024), ceil( (cfg.iProjU*cfg.iProjV*min(1024,Nangles)*4) / gpu.TotalMemory/num_gpu)); % gpu memory limit % RAM limits if cfg.iVolX*cfg.iVolY*cfg.iVolZ > 2e6 freemem = 0.8 * utils.check_available_memory; split(4) = max(split(4), num_gpu*(4*(cfg.iProjU*cfg.iProjV*cfg.iProjAngles... + cfg.iVolX*cfg.iVolY*cfg.iVolZ*(1+1/prod(split(1:3)))))... / (freemem * 1e6) ); % RAM memory limit end split(4) = ceil(split(4)); split(1:3) = 2.^nextpow2(split(1:3)); % if any(split ~= 1) % fprintf('Automatically splitting to %ix%ix%ix(%i) cubes \n', split); % end end