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2026-08-07 15:56:42 +09:00
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tomo/utils/find_ML_recon_files_names.m
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% FIND_ML_RECON_FILES_NAMES find names of ML ptychographic reconstructions given
% the param structure defined by YJ for the APS datasets.
% user can search for differernt # of probes and OPR modes
%
% filename = find_projection_files_names(par, scan_num)
%
% Inputs
% **par tomo par structure
% **scan_num scan number
% *returns*
% ++filename filename of the found scan
function [filename,method,roi,scanNo] = find_ML_recon_files_names(par, scan_num)
N_roi = linspace(1,length(par.MLrecon.roi),length(par.MLrecon.roi));
[N_roi_temp, Nprobe_s_temp,var_probe_modes_s_temp] = ndgrid(N_roi,par.MLrecon.Nprobes, par.MLrecon.var_probe_modes);
N_roi_temp = reshape(N_roi_temp,[],1);
Nprobe_s_temp = reshape(Nprobe_s_temp,[],1);
var_probe_modes_s_temp = reshape(var_probe_modes_s_temp,[],1);
filename = [];
scanNo = num2str(scan_num);
for i=1:length(Nprobe_s_temp)
roi = par.MLrecon.roi{N_roi_temp(i)};
Nprobe = Nprobe_s_temp(i);
vp_modes = var_probe_modes_s_temp(i);
%method = sprintf(par.MLrecon.method,Nprobe,vp_modes,Nprobe,vp_modes);
method = '';
for j=1:length(par.MLrecon.method)
method = strcat(method,sprintf(par.MLrecon.method{j},Nprobe,vp_modes));
end
filename_temp = strcat(par.MLrecon.path, sprintf(par.scan_string_format, scan_num),roi, method,'/Niter',num2str(par.MLrecon.Niter),'.mat');
%disp('filename_temp:')
%disp(filename_temp)
if ~isempty(dir(filename_temp))
d = dir(filename_temp);
%filename = filename_temp;
filename = strcat(d(1).folder,'/',d(1).name);
%disp('filename:')
%disp(filename)
%disp(strcat(d.folder,'/',d.name))
%disp(strcat(sprintf(par.scan_string_format, scan_num),'--',method,'Niter',num2str(par.MLrecon.Niter),'.mat'))
break
end
end
%{
%bug?
%%%data_in_subfolders = exist(fullfile(par.analysis_path, 'S00000-00999'), 'dir');
data_in_subfolders = exist(fullfile(par.analysis_path, 'S02000-02999'), 'dir');
if data_in_subfolders
% new x12sa path format
% bug?
%%%path = fullfile(par.analysis_path, utils.compile_x12sa_dirname(scan_num) , [par.fileprefix '*' par.filesuffix '*.' par.file_extension]);
%modified by YJ
path = fullfile(par.analysis_path, utils.compile_x12sa_dirname(scan_num) , [sprintf('S%05i',scan_num), par.fileprefix '*' par.filesuffix '*.' par.file_extension]);
else
% compatibility option for original analysis paths
%path = fullfile(par.analysis_path,sprintf('S%05i',scan_num),[par.fileprefix '*' par.filesuffix '*.' par.file_extension]);
% path = strcat(par.analysis_path,sprintf(par.scan_string_format,scan_num),'.', par.file_extension);
%generate a list of possibe recon parameters
%current support: number of probe modes; number of OPR modes
[Nprobe_s_temp,var_probe_modes_s_temp] = meshgrid(par.MLrecon.Nprobes, par.MLrecon.var_probe_modes);
Nprobe_s_temp = reshape(Nprobe_s_temp,[],1);
var_probe_modes_s_temp = reshape(var_probe_modes_s_temp,[],1);
for i=1:length(Nprobe_s_temp)
Nprobe = Nprobe_s_temp(i);
vp_modes = var_probe_modes_s_temp(i);
method = sprintf(par.MLrecon.method,Nprobe,vp_modes,Nprobe,vp_modes);
filename = strcat(par.MLrecon.path, sprintf(par.scan_string_format, scan_num),par.MLrecon.roi, method,'Niter',num2str(par.MLrecon.Niter),'.mat');
if ~isempty(dir(filename))
disp(strcat(sprintf(par.scan_string_format, scan_num),'--',method,'Niter',num2str(par.MLrecon.Niter),'.mat'))
break
end
end
end
%}
%{
while contains(path, '**')
path = replace(path, '**', '*'); % prevent failure when path string contains multiple asterix
end
path = utils.abspath(path);
path = dir(path);
if isempty(path)
filename = [];
return
end
% take the last file fitting the constraints
[~,ind]=sort([path.datenum]);
filename = fullfile(path(ind(1)).folder, path(ind(1)).name);
%}
end