initial commit

tomo/tests/run_tests.m

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+clear; close all; clc
+addpath('utils')
+addpath(find_base_package())
+utils.verbose(struct('prefix', 'run_tests'))
+
+%% SELECTED TESTS TO BE RUN 
+test_astra = true;    % run tests of ASTRA projectiors in +astra and multiGPU astra wrappers in +tomo, check that they all provide consistent results 
+test_mex_function = true;  % test MEX functions used by tomo.block_fun, tomo.Ax_sup_partial, tomo.Axt_sup_partial
+test_simulated_data = true; % test uses synthetic data to run all templates under well controlled conditions 
+test_real_data = true; % test uses real data to run all templates under real experimental conditions 
+
+%% SELECT BASIC PARAMETERS 
+GPU_id = 1; 
+base_path = './';           % path to store temporal data
+
+
+gpuDevice(GPU_id);
+utils.report_GPU_usage
+pause(1)
+
+%%  TEST ASTRA WRAPPER
+% This script will run some basic features in the +astra/ ASTRA wrapper code
+% ie reconstruciton , splitting on GPU, splitting between multiple workers 
+% compare results with expected values to detect inconsistencies 
+if test_astra
+    utils.verbose(struct('prefix', 'Test ASTRA'))
+    run('tests/astra_wrappers_tests.m')
+end
+%%  TEST MEX FUNCTION  
+% the MEX functions in +utils/private use OpenMP to accelerate memory transfer from 
+% large array into small sub array and back
+if test_mex_function
+    utils.verbose(struct('prefix', 'Test MEX'))
+    run('tests/test_MEX_functions.m')
+end
+clearvars -except GPU_id base_path test_real_data test_simulated_data
+
+
+%% TEMPLATE FOR AUTOMATIC TOMOGRAPHY CODE TESTS 
+% test uses synthetic data to run all templates under well controlled
+% conditions, use setting if you want to add noise or other difficulties to
+% be tested during alignment 
+if test_simulated_data
+    utils.verbose(struct('prefix', 'Test simulated data'))
+    run('tests/test_tomo_simulated_data.m')
+end
+clearvars -except GPU_id base_path test_real_data 
+
+if test_real_data
+    utils.verbose(struct('prefix', 'Test real data'))
+    run('tests/test_tomo_real_data.m')
+end
+