initial commit

tomo/+prepare/load_projections_num_aps.m

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+%   LOAD_PROJECTIONS_NUM_APS load reconstructed projections numbers
+%  created by YJ based on PSI's function
+%   Only read scan numbers, usedful for debugging
+%   Inputs: 
+%       **par - parameter structure 
+%       **exclude_scans - list of scans to be excluded from loading, [] = none
+%       **theta - angles of the scans 
+
+function [scanstomo]  = load_projections_num_aps(par, exclude_scans, theta)
+
+import ptycho.* 
+import utils.* 
+import io.*
+import plotting.*
+
+scanstomo = par.scanstomo; 
+
+% avoid loading scans listed in 'exclude_scans'
+if  ~isempty(exclude_scans)
+    ind = ismember(scanstomo, exclude_scans); 
+    scanstomo(ind) = []; 
+    theta(ind) = []; 
+end
+
+verbose(1,'Checking available files')
+missing_scans = []; 
+proj_file_names = {};
+proj_recon_method = {};
+proj_roi = {};
+proj_scanNo = {};
+for num = 1:length(scanstomo)
+    progressbar(num, length(scanstomo))
+    %proj_file_names{num} = find_ptycho_filename(par.analysis_path,scanstomo(num),par.fileprefix,par.filesuffix, par.file_extension);
+    %proj_file_names{num} = find_projection_files_names_aps(par, scanstomo(num));
+    [proj_file_names{num},proj_recon_method{num},proj_roi{num},proj_scanNo{num}] = find_ML_recon_files_names(par, scanstomo(num));
+    %disp(proj_file_names{num})
+    if isempty(proj_file_names{num})
+        missing_scans(end+1) = scanstomo(num); 
+    end
+end
+
+verbose(par.verbose_level); % return to original settings
+
+if ~isempty(missing_scans)
+    ind = ismember(scanstomo, missing_scans); 
+    verbose(1,['Scans  not found are ' num2str(missing_scans)])
+    verbose(1,['Projections not found are ' num2str(find(ind))])
+    scanstomo(ind) = []; 
+    theta(ind) = []; 
+    proj_file_names(ind) = []; 
+    proj_recon_method(ind) = [];
+    proj_roi(ind) = [];
+    proj_scanNo(ind) = [];
+else
+    verbose(1,'All projections found')
+end
+
+num_proj = length(scanstomo); 
+
+
+tic
+
+if num_proj == 0
+    verbose(0, 'No new projections loaded')
+    return
+end
+    
+end