initial commit

ptycho/utils/convert_APS_ptycho_recon.m

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+%convert_APS_ptycho_recon.m
+
+flip_probe = false;
+%% load probe
+probe_temp = outputs.probe{1};
+probe = zeros(size(probe_temp,1),size(probe_temp,2),length(outputs.probe));
+for i=1:length(outputs.probe)
+   probe(:,:,i) = outputs.probe{i}(:,:,1,1);
+   if flip_probe
+       probe(:,:,i) = rot90(probe(:,:,i),2);    
+   end
+end
+clear i probe_temp
+%% add parameters
+p = {};
+p.binning = false;
+p.detector.binning = false;