mirror of
https://github.com/c-sooyoung/fold_slice.git
synced 2026-09-18 00:49:09 +09:00
initial commit
This commit is contained in:
@@ -0,0 +1,131 @@
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%FILELIST Check for file queue
|
||||
% checks for mat/dat files
|
||||
% ** p p structure
|
||||
%
|
||||
% returns:
|
||||
% ++ p p structure
|
||||
% ++ status_ok status flag
|
||||
%
|
||||
% see also: scans.get_queue
|
||||
|
||||
% Academic License Agreement
|
||||
%
|
||||
% Source Code
|
||||
%
|
||||
% Introduction
|
||||
% • This license agreement sets forth the terms and conditions under which the PAUL SCHERRER INSTITUT (PSI), CH-5232 Villigen-PSI, Switzerland (hereafter "LICENSOR")
|
||||
% will grant you (hereafter "LICENSEE") a royalty-free, non-exclusive license for academic, non-commercial purposes only (hereafter "LICENSE") to use the cSAXS
|
||||
% ptychography MATLAB package computer software program and associated documentation furnished hereunder (hereafter "PROGRAM").
|
||||
%
|
||||
% Terms and Conditions of the LICENSE
|
||||
% 1. LICENSOR grants to LICENSEE a royalty-free, non-exclusive license to use the PROGRAM for academic, non-commercial purposes, upon the terms and conditions
|
||||
% hereinafter set out and until termination of this license as set forth below.
|
||||
% 2. LICENSEE acknowledges that the PROGRAM is a research tool still in the development stage. The PROGRAM is provided without any related services, improvements
|
||||
% or warranties from LICENSOR and that the LICENSE is entered into in order to enable others to utilize the PROGRAM in their academic activities. It is the
|
||||
% LICENSEE’s responsibility to ensure its proper use and the correctness of the results.”
|
||||
% 3. THE PROGRAM IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR
|
||||
% A PARTICULAR PURPOSE AND NONINFRINGEMENT OF ANY PATENTS, COPYRIGHTS, TRADEMARKS OR OTHER RIGHTS. IN NO EVENT SHALL THE LICENSOR, THE AUTHORS OR THE COPYRIGHT
|
||||
% HOLDERS BE LIABLE FOR ANY CLAIM, DIRECT, INDIRECT OR CONSEQUENTIAL DAMAGES OR OTHER LIABILITY ARISING FROM, OUT OF OR IN CONNECTION WITH THE PROGRAM OR THE USE
|
||||
% OF THE PROGRAM OR OTHER DEALINGS IN THE PROGRAM.
|
||||
% 4. LICENSEE agrees that it will use the PROGRAM and any modifications, improvements, or derivatives of PROGRAM that LICENSEE may create (collectively,
|
||||
% "IMPROVEMENTS") solely for academic, non-commercial purposes and that any copy of PROGRAM or derivatives thereof shall be distributed only under the same
|
||||
% license as PROGRAM. The terms "academic, non-commercial", as used in this Agreement, mean academic or other scholarly research which (a) is not undertaken for
|
||||
% profit, or (b) is not intended to produce works, services, or data for commercial use, or (c) is neither conducted, nor funded, by a person or an entity engaged
|
||||
% in the commercial use, application or exploitation of works similar to the PROGRAM.
|
||||
% 5. LICENSEE agrees that it shall make the following acknowledgement in any publication resulting from the use of the PROGRAM or any translation of the code into
|
||||
% another computing language:
|
||||
% "Data processing was carried out using the cSAXS ptychography MATLAB package developed by the Science IT and the coherent X-ray scattering (CXS) groups, Paul
|
||||
% Scherrer Institut, Switzerland."
|
||||
%
|
||||
% Additionally, any publication using the package, or any translation of the code into another computing language should cite for difference map:
|
||||
% P. Thibault, M. Dierolf, A. Menzel, O. Bunk, C. David, F. Pfeiffer, High-resolution scanning X-ray diffraction microscopy, Science 321, 379–382 (2008).
|
||||
% (doi: 10.1126/science.1158573),
|
||||
% for maximum likelihood:
|
||||
% P. Thibault and M. Guizar-Sicairos, Maximum-likelihood refinement for coherent diffractive imaging, New J. Phys. 14, 063004 (2012).
|
||||
% (doi: 10.1088/1367-2630/14/6/063004),
|
||||
% for mixed coherent modes:
|
||||
% P. Thibault and A. Menzel, Reconstructing state mixtures from diffraction measurements, Nature 494, 68–71 (2013). (doi: 10.1038/nature11806),
|
||||
% and/or for multislice:
|
||||
% E. H. R. Tsai, I. Usov, A. Diaz, A. Menzel, and M. Guizar-Sicairos, X-ray ptychography with extended depth of field, Opt. Express 24, 29089–29108 (2016).
|
||||
% (doi: 10.1364/OE.24.029089).
|
||||
% 6. Except for the above-mentioned acknowledgment, LICENSEE shall not use the PROGRAM title or the names or logos of LICENSOR, nor any adaptation thereof, nor the
|
||||
% names of any of its employees or laboratories, in any advertising, promotional or sales material without prior written consent obtained from LICENSOR in each case.
|
||||
% 7. Ownership of all rights, including copyright in the PROGRAM and in any material associated therewith, shall at all times remain with LICENSOR, and LICENSEE
|
||||
% agrees to preserve same. LICENSEE agrees not to use any portion of the PROGRAM or of any IMPROVEMENTS in any machine-readable form outside the PROGRAM, nor to
|
||||
% make any copies except for its internal use, without prior written consent of LICENSOR. LICENSEE agrees to place the following copyright notice on any such copies:
|
||||
% © All rights reserved. PAUL SCHERRER INSTITUT, Switzerland, Laboratory for Macromolecules and Bioimaging, 2017.
|
||||
% 8. The LICENSE shall not be construed to confer any rights upon LICENSEE by implication or otherwise except as specifically set forth herein.
|
||||
% 9. DISCLAIMER: LICENSEE shall be aware that Phase Focus Limited of Sheffield, UK has an international portfolio of patents and pending applications which relate
|
||||
% to ptychography and that the PROGRAM may be capable of being used in circumstances which may fall within the claims of one or more of the Phase Focus patents,
|
||||
% in particular of patent with international application number PCT/GB2005/001464. The LICENSOR explicitly declares not to indemnify the users of the software
|
||||
% in case Phase Focus or any other third party will open a legal action against the LICENSEE due to the use of the program.
|
||||
% 10. This Agreement shall be governed by the material laws of Switzerland and any dispute arising out of this Agreement or use of the PROGRAM shall be brought before
|
||||
% the courts of Zürich, Switzerland.
|
||||
|
||||
function [ p, status_ok ] = filelist(p)
|
||||
import utils.verbose
|
||||
|
||||
|
||||
p.queue.path = utils.abspath(p.queue.path);
|
||||
|
||||
|
||||
% Prepare folders for queue if not done yet
|
||||
if ~exist(fullfile(p.queue.path,'in_progress'))
|
||||
mkdir(fullfile(p.queue.path,'in_progress'));
|
||||
end
|
||||
if ~exist(fullfile(p.queue.path,'failed'))
|
||||
mkdir(fullfile(p.queue.path,'failed'));
|
||||
end
|
||||
|
||||
|
||||
fext = 'dat';
|
||||
status_ok = true;
|
||||
verbose(1,['p.queue.path is active, touching folder and looking for files in the queue in ' p.queue.path]);
|
||||
[status, result] = system(['touch ' p.queue.path '.'], '-echo');
|
||||
files_recons = dir([p.queue.path 'scan*.dat']);
|
||||
|
||||
if isempty(files_recons)
|
||||
files_recons = dir(fullfile(p.queue.path,'*.mat'));
|
||||
fext = 'mat';
|
||||
end
|
||||
|
||||
|
||||
|
||||
% Now move this file to another folder
|
||||
|
||||
|
||||
% Found one file to reconstruct
|
||||
if ~isempty(files_recons)
|
||||
if p.queue.recon_latest_first
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||||
p.queue.file_this_recons = files_recons(end).name;
|
||||
else
|
||||
p.queue.file_this_recons = files_recons(1).name;
|
||||
end
|
||||
|
||||
verbose(1,['Found file in queue ' fullfile(p.queue.path,p.queue.file_this_recons)]);
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||||
% now move it quickly before someone else will take it
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||||
try
|
||||
io.movefile_fast(fullfile(p.queue.path,p.queue.file_this_recons),fullfile(p.queue.path,'in_progress'))
|
||||
verbose(1,['Moving file to ' fullfile(p.queue.path,'in_progress')]);
|
||||
catch
|
||||
verbose(1,['Failed moving file to ' fullfile(p.queue.path,'in_progress')]);
|
||||
pause(1);
|
||||
status_ok = false;
|
||||
end
|
||||
|
||||
|
||||
% and finally parse the file
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||||
verbose(2,['Parsing file ' fullfile(p.queue.path,p.queue.file_this_recons)]);
|
||||
p = parse_queue_file(fullfile(p.queue.path,'in_progress',p.queue.file_this_recons),p, fext);
|
||||
verbose(2,['Succesfully parsed file ' fullfile(p.queue.path,p.queue.file_this_recons)]);
|
||||
|
||||
|
||||
|
||||
else
|
||||
verbose(1,'Did not find enough files in queue, pausing %gs seconds and then exiting', p.queue.file_queue_timeout)
|
||||
pause(p.queue.file_queue_timeout)
|
||||
status_ok = false;
|
||||
end
|
||||
|
||||
end
|
||||
|
||||
@@ -0,0 +1,140 @@
|
||||
% p = ptycho_parse_omny_dat(filename,p)
|
||||
% It parses dat files from queue to modify a ptychography
|
||||
% p.structure. This allows for instance to change the scan number or
|
||||
% another field. It also allows to define fields that do not exist.
|
||||
% Inputs
|
||||
% filename Filename with path of the dat file
|
||||
% p Optional input, if it is given the output will be equal to p
|
||||
% in all fields that are not modified
|
||||
% Output
|
||||
% p_out Structure with new, or modified fields.
|
||||
|
||||
% Academic License Agreement
|
||||
%
|
||||
% Source Code
|
||||
%
|
||||
% Introduction
|
||||
% • This license agreement sets forth the terms and conditions under which the PAUL SCHERRER INSTITUT (PSI), CH-5232 Villigen-PSI, Switzerland (hereafter "LICENSOR")
|
||||
% will grant you (hereafter "LICENSEE") a royalty-free, non-exclusive license for academic, non-commercial purposes only (hereafter "LICENSE") to use the cSAXS
|
||||
% ptychography MATLAB package computer software program and associated documentation furnished hereunder (hereafter "PROGRAM").
|
||||
%
|
||||
% Terms and Conditions of the LICENSE
|
||||
% 1. LICENSOR grants to LICENSEE a royalty-free, non-exclusive license to use the PROGRAM for academic, non-commercial purposes, upon the terms and conditions
|
||||
% hereinafter set out and until termination of this license as set forth below.
|
||||
% 2. LICENSEE acknowledges that the PROGRAM is a research tool still in the development stage. The PROGRAM is provided without any related services, improvements
|
||||
% or warranties from LICENSOR and that the LICENSE is entered into in order to enable others to utilize the PROGRAM in their academic activities. It is the
|
||||
% LICENSEE’s responsibility to ensure its proper use and the correctness of the results.”
|
||||
% 3. THE PROGRAM IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR
|
||||
% A PARTICULAR PURPOSE AND NONINFRINGEMENT OF ANY PATENTS, COPYRIGHTS, TRADEMARKS OR OTHER RIGHTS. IN NO EVENT SHALL THE LICENSOR, THE AUTHORS OR THE COPYRIGHT
|
||||
% HOLDERS BE LIABLE FOR ANY CLAIM, DIRECT, INDIRECT OR CONSEQUENTIAL DAMAGES OR OTHER LIABILITY ARISING FROM, OUT OF OR IN CONNECTION WITH THE PROGRAM OR THE USE
|
||||
% OF THE PROGRAM OR OTHER DEALINGS IN THE PROGRAM.
|
||||
% 4. LICENSEE agrees that it will use the PROGRAM and any modifications, improvements, or derivatives of PROGRAM that LICENSEE may create (collectively,
|
||||
% "IMPROVEMENTS") solely for academic, non-commercial purposes and that any copy of PROGRAM or derivatives thereof shall be distributed only under the same
|
||||
% license as PROGRAM. The terms "academic, non-commercial", as used in this Agreement, mean academic or other scholarly research which (a) is not undertaken for
|
||||
% profit, or (b) is not intended to produce works, services, or data for commercial use, or (c) is neither conducted, nor funded, by a person or an entity engaged
|
||||
% in the commercial use, application or exploitation of works similar to the PROGRAM.
|
||||
% 5. LICENSEE agrees that it shall make the following acknowledgement in any publication resulting from the use of the PROGRAM or any translation of the code into
|
||||
% another computing language:
|
||||
% "Data processing was carried out using the cSAXS ptychography MATLAB package developed by the Science IT and the coherent X-ray scattering (CXS) groups, Paul
|
||||
% Scherrer Institut, Switzerland."
|
||||
%
|
||||
% Additionally, any publication using the package, or any translation of the code into another computing language should cite for difference map:
|
||||
% P. Thibault, M. Dierolf, A. Menzel, O. Bunk, C. David, F. Pfeiffer, High-resolution scanning X-ray diffraction microscopy, Science 321, 379–382 (2008).
|
||||
% (doi: 10.1126/science.1158573),
|
||||
% for maximum likelihood:
|
||||
% P. Thibault and M. Guizar-Sicairos, Maximum-likelihood refinement for coherent diffractive imaging, New J. Phys. 14, 063004 (2012).
|
||||
% (doi: 10.1088/1367-2630/14/6/063004),
|
||||
% for mixed coherent modes:
|
||||
% P. Thibault and A. Menzel, Reconstructing state mixtures from diffraction measurements, Nature 494, 68–71 (2013). (doi: 10.1038/nature11806),
|
||||
% and/or for multislice:
|
||||
% E. H. R. Tsai, I. Usov, A. Diaz, A. Menzel, and M. Guizar-Sicairos, X-ray ptychography with extended depth of field, Opt. Express 24, 29089–29108 (2016).
|
||||
% (doi: 10.1364/OE.24.029089).
|
||||
% 6. Except for the above-mentioned acknowledgment, LICENSEE shall not use the PROGRAM title or the names or logos of LICENSOR, nor any adaptation thereof, nor the
|
||||
% names of any of its employees or laboratories, in any advertising, promotional or sales material without prior written consent obtained from LICENSOR in each case.
|
||||
% 7. Ownership of all rights, including copyright in the PROGRAM and in any material associated therewith, shall at all times remain with LICENSOR, and LICENSEE
|
||||
% agrees to preserve same. LICENSEE agrees not to use any portion of the PROGRAM or of any IMPROVEMENTS in any machine-readable form outside the PROGRAM, nor to
|
||||
% make any copies except for its internal use, without prior written consent of LICENSOR. LICENSEE agrees to place the following copyright notice on any such copies:
|
||||
% © All rights reserved. PAUL SCHERRER INSTITUT, Switzerland, Laboratory for Macromolecules and Bioimaging, 2017.
|
||||
% 8. The LICENSE shall not be construed to confer any rights upon LICENSEE by implication or otherwise except as specifically set forth herein.
|
||||
% 9. DISCLAIMER: LICENSEE shall be aware that Phase Focus Limited of Sheffield, UK has an international portfolio of patents and pending applications which relate
|
||||
% to ptychography and that the PROGRAM may be capable of being used in circumstances which may fall within the claims of one or more of the Phase Focus patents,
|
||||
% in particular of patent with international application number PCT/GB2005/001464. The LICENSOR explicitly declares not to indemnify the users of the software
|
||||
% in case Phase Focus or any other third party will open a legal action against the LICENSEE due to the use of the program.
|
||||
% 10. This Agreement shall be governed by the material laws of Switzerland and any dispute arising out of this Agreement or use of the PROGRAM shall be brought before
|
||||
% the courts of Zürich, Switzerland.
|
||||
|
||||
function p_out = parse_queue_file(filename,p, fext)
|
||||
import utils.update_param
|
||||
|
||||
if nargin < 1
|
||||
error('At least one argument, filename, should be given')
|
||||
return
|
||||
end
|
||||
|
||||
if exist('p')
|
||||
if ~isstruct(p)
|
||||
error('Second argument, p, must be a structure')
|
||||
return
|
||||
else
|
||||
p_out = p;
|
||||
end
|
||||
else
|
||||
p_out = struct;
|
||||
end
|
||||
|
||||
if ~exist(filename,'file')
|
||||
warning(sprintf('I did not find the file: %s. Output structure will be then the same as input structure', filename))
|
||||
return
|
||||
end
|
||||
|
||||
|
||||
switch fext
|
||||
|
||||
case 'dat'
|
||||
fid = fopen(filename,'r');
|
||||
|
||||
tline = fgetl(fid);
|
||||
while ischar(tline)
|
||||
str_parts = strsplit(tline, ' ');
|
||||
if numel(str_parts)>1
|
||||
fname = strtrim(str_parts{1});
|
||||
if strcmpi(fname(1:2), 'p.')
|
||||
% found p entry
|
||||
val = [];
|
||||
for ii=2:numel(str_parts)
|
||||
if ~isempty(strtrim(str_parts{ii}))
|
||||
if ~isnan(str2double(str_parts{ii}))
|
||||
% found number
|
||||
val = [val, str2double(str_parts{ii})];
|
||||
else
|
||||
% found char
|
||||
val = [val, strtrim(str_parts{ii})];
|
||||
end
|
||||
end
|
||||
end
|
||||
p_out.(fname(3:end)) = val;
|
||||
|
||||
|
||||
elseif strcmpi(str_parts{1}, 'samplename')
|
||||
p_out.samplename = strjoin(strtrim(str_parts(2:end)), '_');
|
||||
% keep only printable chars (prevent users to fill put unicode characters)
|
||||
p_out.samplename = p_out.samplename(isstrprop(p_out.samplename, 'print'));
|
||||
% remove spaces from the file name
|
||||
p_out.samplename = replace(p_out.samplename, ' ', '_');
|
||||
end
|
||||
end
|
||||
tline = fgetl(fid);
|
||||
end
|
||||
|
||||
fclose(fid);
|
||||
|
||||
case 'mat'
|
||||
% load mat file and make sure that the paths are updated correctly
|
||||
f = load(filename);
|
||||
p = update_param(p, f.p);
|
||||
p_out = core.ptycho_prepare_paths(p, true);
|
||||
otherwise
|
||||
error('Unknown file extension %s.', fext);
|
||||
end
|
||||
|
||||
end
|
||||
@@ -0,0 +1,91 @@
|
||||
%REMOTE_QUEUE
|
||||
|
||||
% Academic License Agreement
|
||||
%
|
||||
% Source Code
|
||||
%
|
||||
% Introduction
|
||||
% • This license agreement sets forth the terms and conditions under which the PAUL SCHERRER INSTITUT (PSI), CH-5232 Villigen-PSI, Switzerland (hereafter "LICENSOR")
|
||||
% will grant you (hereafter "LICENSEE") a royalty-free, non-exclusive license for academic, non-commercial purposes only (hereafter "LICENSE") to use the cSAXS
|
||||
% ptychography MATLAB package computer software program and associated documentation furnished hereunder (hereafter "PROGRAM").
|
||||
%
|
||||
% Terms and Conditions of the LICENSE
|
||||
% 1. LICENSOR grants to LICENSEE a royalty-free, non-exclusive license to use the PROGRAM for academic, non-commercial purposes, upon the terms and conditions
|
||||
% hereinafter set out and until termination of this license as set forth below.
|
||||
% 2. LICENSEE acknowledges that the PROGRAM is a research tool still in the development stage. The PROGRAM is provided without any related services, improvements
|
||||
% or warranties from LICENSOR and that the LICENSE is entered into in order to enable others to utilize the PROGRAM in their academic activities. It is the
|
||||
% LICENSEE’s responsibility to ensure its proper use and the correctness of the results.”
|
||||
% 3. THE PROGRAM IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR
|
||||
% A PARTICULAR PURPOSE AND NONINFRINGEMENT OF ANY PATENTS, COPYRIGHTS, TRADEMARKS OR OTHER RIGHTS. IN NO EVENT SHALL THE LICENSOR, THE AUTHORS OR THE COPYRIGHT
|
||||
% HOLDERS BE LIABLE FOR ANY CLAIM, DIRECT, INDIRECT OR CONSEQUENTIAL DAMAGES OR OTHER LIABILITY ARISING FROM, OUT OF OR IN CONNECTION WITH THE PROGRAM OR THE USE
|
||||
% OF THE PROGRAM OR OTHER DEALINGS IN THE PROGRAM.
|
||||
% 4. LICENSEE agrees that it will use the PROGRAM and any modifications, improvements, or derivatives of PROGRAM that LICENSEE may create (collectively,
|
||||
% "IMPROVEMENTS") solely for academic, non-commercial purposes and that any copy of PROGRAM or derivatives thereof shall be distributed only under the same
|
||||
% license as PROGRAM. The terms "academic, non-commercial", as used in this Agreement, mean academic or other scholarly research which (a) is not undertaken for
|
||||
% profit, or (b) is not intended to produce works, services, or data for commercial use, or (c) is neither conducted, nor funded, by a person or an entity engaged
|
||||
% in the commercial use, application or exploitation of works similar to the PROGRAM.
|
||||
% 5. LICENSEE agrees that it shall make the following acknowledgement in any publication resulting from the use of the PROGRAM or any translation of the code into
|
||||
% another computing language:
|
||||
% "Data processing was carried out using the cSAXS ptychography MATLAB package developed by the Science IT and the coherent X-ray scattering (CXS) groups, Paul
|
||||
% Scherrer Institut, Switzerland."
|
||||
%
|
||||
% Additionally, any publication using the package, or any translation of the code into another computing language should cite for difference map:
|
||||
% P. Thibault, M. Dierolf, A. Menzel, O. Bunk, C. David, F. Pfeiffer, High-resolution scanning X-ray diffraction microscopy, Science 321, 379–382 (2008).
|
||||
% (doi: 10.1126/science.1158573),
|
||||
% for maximum likelihood:
|
||||
% P. Thibault and M. Guizar-Sicairos, Maximum-likelihood refinement for coherent diffractive imaging, New J. Phys. 14, 063004 (2012).
|
||||
% (doi: 10.1088/1367-2630/14/6/063004),
|
||||
% for mixed coherent modes:
|
||||
% P. Thibault and A. Menzel, Reconstructing state mixtures from diffraction measurements, Nature 494, 68–71 (2013). (doi: 10.1038/nature11806),
|
||||
% and/or for multislice:
|
||||
% E. H. R. Tsai, I. Usov, A. Diaz, A. Menzel, and M. Guizar-Sicairos, X-ray ptychography with extended depth of field, Opt. Express 24, 29089–29108 (2016).
|
||||
% (doi: 10.1364/OE.24.029089).
|
||||
% 6. Except for the above-mentioned acknowledgment, LICENSEE shall not use the PROGRAM title or the names or logos of LICENSOR, nor any adaptation thereof, nor the
|
||||
% names of any of its employees or laboratories, in any advertising, promotional or sales material without prior written consent obtained from LICENSOR in each case.
|
||||
% 7. Ownership of all rights, including copyright in the PROGRAM and in any material associated therewith, shall at all times remain with LICENSOR, and LICENSEE
|
||||
% agrees to preserve same. LICENSEE agrees not to use any portion of the PROGRAM or of any IMPROVEMENTS in any machine-readable form outside the PROGRAM, nor to
|
||||
% make any copies except for its internal use, without prior written consent of LICENSOR. LICENSEE agrees to place the following copyright notice on any such copies:
|
||||
% © All rights reserved. PAUL SCHERRER INSTITUT, Switzerland, Laboratory for Macromolecules and Bioimaging, 2017.
|
||||
% 8. The LICENSE shall not be construed to confer any rights upon LICENSEE by implication or otherwise except as specifically set forth herein.
|
||||
% 9. DISCLAIMER: LICENSEE shall be aware that Phase Focus Limited of Sheffield, UK has an international portfolio of patents and pending applications which relate
|
||||
% to ptychography and that the PROGRAM may be capable of being used in circumstances which may fall within the claims of one or more of the Phase Focus patents,
|
||||
% in particular of patent with international application number PCT/GB2005/001464. The LICENSOR explicitly declares not to indemnify the users of the software
|
||||
% in case Phase Focus or any other third party will open a legal action against the LICENSEE due to the use of the program.
|
||||
% 10. This Agreement shall be governed by the material laws of Switzerland and any dispute arising out of this Agreement or use of the PROGRAM shall be brought before
|
||||
% the courts of Zürich, Switzerland.
|
||||
|
||||
function [p, status_ok] = remote_queue(p)
|
||||
import utils.verbose
|
||||
import utils.update_param
|
||||
|
||||
status_ok = true;
|
||||
verbose(1,['Remote queue is active, touching folder and looking for files in the queue in ' p.queue.remote_path]);
|
||||
[~, ~] = system(['touch ' p.queue.remote_path '.'], '-echo');
|
||||
files_recons = dir([p.queue.remote_path '*.mat']);
|
||||
% Found one file to reconstruct
|
||||
if ~isempty(files_recons)
|
||||
if p.queue.recon_latest_first
|
||||
p.queue.file_this_recons = files_recons(end).name;
|
||||
else
|
||||
p.queue.file_this_recons = files_recons(1).name;
|
||||
end
|
||||
|
||||
verbose(1,['Found file in queue ' fullfile(p.queue.remote_path,p.queue.file_this_recons)]);
|
||||
f = load(fullfile(p.queue.remote_path,p.queue.file_this_recons));
|
||||
p = update_param(f.p, p);
|
||||
|
||||
% Now move this file to another folder
|
||||
try
|
||||
movefile(fullfile(p.queue.remote_path,p.queue.file_this_recons),fullfile(p.queue.remote_path,'in_progress'))
|
||||
verbose(1,['Moving file to ' fullfile(p.queue.remote_path,'in_progress')]);
|
||||
catch
|
||||
verbose(1,['Failed moving file to ' fullfile(p.queue.remote_path,'in_progress')]);
|
||||
pause(1);
|
||||
status_ok = false;
|
||||
end
|
||||
else
|
||||
verbose(1,'Did not find enough files in queue, pausing 10 seconds and then exiting')
|
||||
pause(10)
|
||||
status_ok = false;
|
||||
end
|
||||
end
|
||||
Reference in New Issue
Block a user