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% INTERPOLATEFT_3D Computes 3D interpolated image using Fourier transform, i.e. dirichlet
% interpolation. Computes the FT and then adjusts the size by zero padding
% or cropping then it computes the IFT. A real valued input may have
% residual imaginary components, which is given by numerical precision of
% the FT and IFT.
%
% imout = interpolateFT_3D(im,outsize, fourier_mask)
%
% Inputs
% **im - Input real/complex 3D volume
% **outsize - Output size of array [ny nx nz]
% **fourier_mask - if provided, apply mask in fourier space. ifftn( mask * fftn(im))
% *returns*
% ++imout - Output real/complex volume
%*-----------------------------------------------------------------------*
%|                                                                       |
%|  Except where otherwise noted, this work is licensed under a          |
%|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            |
%|  International (CC BY-NC-SA 4.0) license.                             |
%|                                                                       |
%|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    |
%|                                                                       |
%|      Author: CXS group, PSI  |
%*-----------------------------------------------------------------------*
% You may use this code with the following provisions:
%
% If the code is fully or partially redistributed, or rewritten in another
% computing language this notice should be included in the redistribution.
%
% If this code, or subfunctions or parts of it, is used for research in a
% publication or if it is fully or partially rewritten for another
% computing language the authors and institution should be acknowledged
% in written form in the publication: Data processing was carried out
% using the cSAXS matlab package developed by the CXS group,
% Paul Scherrer Institut, Switzerland.
% Variations on the latter text can be incorporated upon discussion with
% the CXS group if needed to more specifically reflect the use of the package
% for the published work.
%
% A publication that focuses on describing features, or parameters, that
% are already existing in the code should be first discussed with the
% authors.
%
% This code and subroutines are part of a continuous development, they
% are provided as they are without guarantees or liability on part
% of PSI or the authors. It is the user responsibility to ensure its
% proper use and the correctness of the results.
function [ imout ] = interpolateFT_3D(im,outsize, fourier_mask)
Nout = outsize;
Nin = size(im);
if all(Nout == Nin) && nargin < 3
imout = im;
return
end
imFT = fftshift(fftn(im));
imout = utils.crop_pad_3D(imFT, outsize);
if nargin > 2
% if provided, apply fourier mask, NOT FFTSHIFTED !!
imout = imout .* fourier_mask;
end
imout = ifftn(ifftshift(imout))*(Nout(1)*Nout(2)*Nout(3)/(Nin(1)*Nin(2)*Nin(3)));
if isreal(im)
imout = real(imout);
end