swim/fold_slice
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swim
2026-08-07 15:56:42 +09:00
commit 91ad25aca9
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+io/imExportTiff.m
+78
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function [ ] = imExportTiff( matrix_input,name,section,varargin)
%Wirte a image stack as a 'Tiff' file
%imExportTiff( matrix,name,section )
% matrix: 3D matrix(y,x,z)
% name: output file name
% section: choose corss sections
% 'XY' matrix(:,:,i)
% 'YZ' matrix(:,i,:)
% 'ZX' matrix(i,:,:)
%
matrix = matrix_input;
matrix = matrix-min(min(min(matrix)));
s = size(matrix);
m = double(max(max(max(matrix))));
if isempty(varargin) %gray
switch section
case 'XY'
imwrite(double(matrix(:,:,1))./m, name,'tiff')
for i=2:s(3)
imwrite(double(matrix(:,:,i))./m, name,'tiff', 'WriteMode','append')
end
case 'ZY'
imwrite(double(squeeze(matrix(:,1,:))./m), name,'tiff')
for i=2:s(2)
imwrite(double(squeeze(matrix(:,i,:))./m), name,'tiff', 'WriteMode','append')
end
case 'ZYs'
imwrite(mat2gray(double(squeeze(matrix(:,1,:)))), name,'tiff')
for i=2:s(2)
imwrite(mat2gray(double(squeeze(matrix(:,i,:)))), name,'tiff', 'WriteMode','append')
end
case 'ZX'
imwrite(double(squeeze(matrix(1,:,:)))./m, name,'tiff')
for i=2:s(1)
imwrite(double(squeeze(matrix(i,:,:)))./m, name,'tiff', 'WriteMode','append')
end
case 'XYs'
imwrite(mat2gray(matrix(:,:,1)), name,'tiff')
for i=2:s(3)
imwrite(mat2gray(matrix(:,:,i)), name,'tiff', 'WriteMode','append')
end
case 'ZXs'
imwrite(squeeze(matrix(1,:,:))./m, name,'tiff')
for i=2:s(1)
imwrite(mat2gray(squeeze(matrix(i,:,:))), name,'tiff', 'WriteMode','append')
end
end
else
a = varargin{1}; %color
switch section
case 'XY'
imwrite(double(matrix(:,:,1))*a*64/m,jet, name,'tiff')
for i=2:s(3)
imwrite(double(matrix(:,:,i))*a*64/m,jet, name,'tiff', 'WriteMode','append')
end
case 'ZY'
imwrite(squeeze(matrix(:,1,:))*a*64/m,jet, name,'tiff')
for i=2:s(2)
imwrite(squeeze(matrix(:,i,:))*a*64/m,jet, name,'tiff', 'WriteMode','append')
end
case 'ZX'
imwrite(squeeze(matrix(1,:,:))*a*64/m,jet, name,'tiff')
for i=2:s(1)
imwrite(squeeze(matrix(i,:,:))*a*64/m,jet, name,'tiff', 'WriteMode','append')
end
case 'XYs'
imwrite(mat2gray(matrix(:,:,1))*a*64,parula, name,'tiff')
for i=2:s(3)
imwrite(mat2gray(matrix(:,:,i))*a*64,parula, name,'tiff', 'WriteMode','append')
end
end
end
end