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+io/convert_radial_2_dat.m

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+% convert_radial_2_dat converts all radial integration mat files in 
+%    readpahtmask into dat files, pauses 10 minutes and repeats
+% 
+% Inputs:
+%    **readpathmask     A cell containing the input file string masks
+%    **outpathmask      A cel containint the corresponding output
+%                       directories
+%
+% Example:
+% readpathmask{1} = '~/Data10/analysis/radial_integration/*.mat';
+% outpathmask{1}  = '~/Data10/analysis/radial_integration_dat/';
+% readpathmask{2} = '~/Data10/analysis/radial_integration_waxs/*.mat';
+% outpathmask{2}  = '~/Data10/analysis/radial_integration_waxs_dat/';
+% convert_radial_2_dat(readpathmask, outpathmask)
+
+%*-----------------------------------------------------------------------*
+%|                                                                       |
+%|  Except where otherwise noted, this work is licensed under a          |
+%|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            |
+%|  International (CC BY-NC-SA 4.0) license.                             |
+%|                                                                       |
+%|  Copyright (c) 2019 by Paul Scherrer Institute (http://www.psi.ch)    |
+%|                                                                       |
+%|       Author: CXS group, PSI                                          |
+%*-----------------------------------------------------------------------*
+% You may use this code with the following provisions:
+%
+% If the code is fully or partially redistributed, or rewritten in another
+%   computing language this notice should be included in the redistribution.
+%
+% If this code, or subfunctions or parts of it, is used for research in a 
+%   publication or if it is fully or partially rewritten for another 
+%   computing language the authors and institution should be acknowledged 
+%   in written form in the publication: “Data processing was carried out 
+%   using the “cSAXS matlab package” developed by the CXS group,
+%   Paul Scherrer Institut, Switzerland.” 
+%   Variations on the latter text can be incorporated upon discussion with 
+%   the CXS group if needed to more specifically reflect the use of the package 
+%   for the published work.
+%
+% A publication that focuses on describing features, or parameters, that
+%    are already existing in the code should be first discussed with the
+%    authors.
+%   
+% This code and subroutines are part of a continuous development, they 
+%    are provided “as they are” without guarantees or liability on part
+%    of PSI or the authors. It is the user responsibility to ensure its 
+%    proper use and the correctness of the results.
+
+
+% clear
+
+% readpathmask{1} = '~/Data10/analysis/radial_integration/*.mat';
+% outpathmask{1}  = '~/Data10/analysis/radial_integration_dat/';
+% 
+% readpathmask{2} = '~/Data10/analysis/radial_integration_waxs/*.mat';
+% outpathmask{2}  = '~/Data10/analysis/radial_integration_waxs_dat/';
+
+function convert_radial_2_dat(readpathmask, outpathmask)
+
+while 1==1
+for ii = 1:numel(readpathmask)
+    if ~exist(outpathmask{ii},'dir')
+        mkdir(outpathmask{ii})
+    end
+    files = dir(readpathmask{ii});
+    for jj = 1:numel(files)
+        currentradial = fullfile(files(jj).folder,files(jj).name);
+        [auxpath, auxname, auxext] = fileparts(currentradial);
+        outputradial  = fullfile(outpathmask{ii},[auxname '.dat']);
+        s = load(currentradial);
+        
+        save_data = [s.q.', ...
+            reshape(s.I_all     , [size(s.I_all,1) size(s.I_all,2)*size(s.I_all,3) ]) , ...
+            reshape(s.I_std     , [size(s.I_std,1) size(s.I_std,2)*size(s.I_std,3) ]) , ...
+            reshape(s.norm_sum  , [size(s.norm_sum,1) size(s.norm_sum,2)*size(s.norm_sum,3) ]) , ...
+            ];
+        
+        fprintf('Saving %s\n',outputradial);
+        save( outputradial , 'save_data', '-ascii','-double');
+    end
+    clear files
+end
+fprintf('Pausing 10 minutes\n')
+pause(60*10)
+end