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%HDF5_DSET_EXISTS check if dataset exists in given file
% file... h5 file path
% dset... dataset name
%
% *optional*
% gpath... path within the h5 file; default root (/)
% check_links... include links; default true
%
% EXAMPLES:
% out = io.HDF.hdf5_dset_exists('./recons.h5',
% 'object_phase_unwrapped', '/reconstruction', true);
%
%*-----------------------------------------------------------------------*
%|                                                                       |
%|  Except where otherwise noted, this work is licensed under a          |
%|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            |
%|  International (CC BY-NC-SA 4.0) license.                             |
%|                                                                       |
%|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    |
%|                                                                       |
%|      Author: CXS group, PSI  |
%*-----------------------------------------------------------------------*
% You may use this code with the following provisions:
%
% If the code is fully or partially redistributed, or rewritten in another
% computing language this notice should be included in the redistribution.
%
% If this code, or subfunctions or parts of it, is used for research in a
% publication or if it is fully or partially rewritten for another
% computing language the authors and institution should be acknowledged
% in written form in the publication: Data processing was carried out
% using the cSAXS matlab package developed by the CXS group,
% Paul Scherrer Institut, Switzerland.
% Variations on the latter text can be incorporated upon discussion with
% the CXS group if needed to more specifically reflect the use of the package
% for the published work.
%
% A publication that focuses on describing features, or parameters, that
% are already existing in the code should be first discussed with the
% authors.
%
% This code and subroutines are part of a continuous development, they
% are provided as they are without guarantees or liability on part
% of PSI or the authors. It is the user responsibility to ensure its
% proper use and the correctness of the results.
function [out] = hdf5_dset_exists(file, dset, varargin)
out = false;
% load info
if nargin > 2
h = h5info(file, varargin{1});
else
h = h5info(file);
end
if nargin > 3
check_links = varargin{2};
else
check_links = true;
end
if nargin > 4
check_groups = varargin{3};
else
check_groups = true;
end
% loop through datasets and check if name exists
for ii=1:numel(h.Datasets)
if strcmpi(h.Datasets(ii).Name, dset)
out = true;
break
end
end
if check_links
for ii=1:numel(h.Links)
if strcmpi(h.Links(ii).Name, dset)
out = true;
break
end
end
end
if check_groups
for ii=1:numel(h.Groups)
[~, gname] = fileparts(h.Groups(ii).Name);
if strcmpi(gname, dset)
out = true;
break
end
end
end
end