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%ADD_CONTENT write matlab structure to H5 file
%*-----------------------------------------------------------------------*
%|                                                                       |
%|  Except where otherwise noted, this work is licensed under a          |
%|  Creative Commons Attribution-NonCommercial-ShareAlike 4.0            |
%|  International (CC BY-NC-SA 4.0) license.                             |
%|                                                                       |
%|  Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch)    |
%|                                                                       |
%|      Author: CXS group, PSI  |
%*-----------------------------------------------------------------------*
% You may use this code with the following provisions:
%
% If the code is fully or partially redistributed, or rewritten in another
% computing language this notice should be included in the redistribution.
%
% If this code, or subfunctions or parts of it, is used for research in a
% publication or if it is fully or partially rewritten for another
% computing language the authors and institution should be acknowledged
% in written form in the publication: “Data processing was carried out
% using the “cSAXS matlab package” developed by the CXS group,
% Paul Scherrer Institut, Switzerland.”
% Variations on the latter text can be incorporated upon discussion with
% the CXS group if needed to more specifically reflect the use of the package
% for the published work.
%
% A publication that focuses on describing features, or parameters, that
% are already existing in the code should be first discussed with the
% authors.
%
% This code and subroutines are part of a continuous development, they
% are provided “as they are” without guarantees or liability on part
% of PSI or the authors. It is the user responsibility to ensure its
% proper use and the correctness of the results.
function add_content(data, gid, plist, comp, overwrite)
import io.HDF.*
fn = fieldnames(data);
for jj=1:length(fn)
if isstruct(data.(fn{jj}))
fn_sub = fieldnames(data.(fn{jj}));
if length(fn_sub) <= 2 && isfield(data.(fn{jj}), 'Value')
% found dataset
if isfield(data.(fn{jj}), 'Attributes')
Attributes.MATLAB_class = class(data.(fn{jj}).Value);
write_dataset(data.(fn{jj}).Value, gid, fn{jj}, plist, comp, overwrite, data.(fn{jj}).Attributes);
else
Attributes.MATLAB_class = class(data.(fn{jj}).Value);
write_dataset(data.(fn{jj}).Value, gid, fn{jj}, plist, comp, overwrite, Attributes);
end
elseif strcmpi(fn{jj}, 'Attributes')
% add attributes to group
fn_attr = fieldnames(data.Attributes);
for ii=1:length(fn_attr)
write_attribute(gid, data.Attributes.(fn_attr{ii}), fn_attr{ii});
end
else
% found group
gid_new = add_groups(gid, fn{jj}, plist, true);
if length(data.(fn{jj})) == 1
add_content(data.(fn{jj}), gid_new, plist, comp, overwrite)
else
fn_names = cell(1,length(data.(fn{jj})));
for ii=1:length(data.(fn{jj}))
fn_names{ii} = sprintf([fn{jj} '_%d'],ii-1);
gid_new_sub = add_groups(gid_new, fn_names{ii}, plist, true);
add_content(data.(fn{jj})(ii), gid_new_sub, plist, comp, overwrite);
end
write_attribute(gid_new, 'structure array', 'MATLAB_class');
end
end
else
% append dataset
Attributes.MATLAB_class = class(data.(fn{jj}));
write_dataset(data.(fn{jj}), gid, fn{jj}, plist, comp, overwrite, Attributes);
end
end
end