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% FUNCTION full_array = add_to_3D(full_array, small_array, position)
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% add one small 3D block into large 3D array
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% Inputs:
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% full_array
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% small_array
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% position - offset from (1,1,1) coordinate in pixels
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% *-----------------------------------------------------------------------*
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% | |
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% | Except where otherwise noted, this work is licensed under a |
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% | Creative Commons Attribution-NonCommercial-ShareAlike 4.0 |
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% | International (CC BY-NC-SA 4.0) license. |
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% | |
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% | Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch) |
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% | |
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% | Author: CXS group, PSI |
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% *-----------------------------------------------------------------------*
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% You may use this code with the following provisions:
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%
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% If the code is fully or partially redistributed, or rewritten in another
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% computing language this notice should be included in the redistribution.
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%
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% If this code, or subfunctions or parts of it, is used for research in a
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% publication or if it is fully or partially rewritten for another
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% computing language the authors and institution should be acknowledged
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% in written form in the publication: “Data processing was carried out
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% using the “cSAXS matlab package” developed by the CXS group,
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% Paul Scherrer Institut, Switzerland.”
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% Variations on the latter text can be incorporated upon discussion with
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% the CXS group if needed to more specifically reflect the use of the package
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% for the published work.
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%
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% A publication that focuses on describing features, or parameters, that
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% are already existing in the code should be first discussed with the
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% authors.
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%
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% This code and subroutines are part of a continuous development, they
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% are provided “as they are” without guarantees or liability on part
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% of PSI or the authors. It is the user responsibility to ensure its
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% proper use and the correctness of the results.
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%
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%
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%
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function full_array = add_to_3D(full_array, small_array, position)
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position = round(position);
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N_f = size(full_array);
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N_s = size(small_array);
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for i = 1:ndims(full_array)
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ind_f{i} = unique(min(N_f(i),max(1,position(i)+(1:N_s(i)))));
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ind_s{i} = unique(min(N_s(i),max(1,ind_f{i}-position(i))));
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end
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full_array(ind_f{:}) = full_array(ind_f{:}) + small_array(ind_s{:});
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end
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@@ -0,0 +1,51 @@
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% FUNCTION sinogram = astra2matlab(sinogram)
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% simple function to reshape sinogram from ASTRA (C++) order to Matlab (FORTRAN) order
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% Inputs:
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% sinogram - real value sinogram
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%*-----------------------------------------------------------------------*
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%| |
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%| Except where otherwise noted, this work is licensed under a |
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%| Creative Commons Attribution-NonCommercial-ShareAlike 4.0 |
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%| International (CC BY-NC-SA 4.0) license. |
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%| |
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%| Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch) |
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%| |
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%| Author: CXS group, PSI |
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%*-----------------------------------------------------------------------*
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% You may use this code with the following provisions:
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%
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% If the code is fully or partially redistributed, or rewritten in another
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% computing language this notice should be included in the redistribution.
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%
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% If this code, or subfunctions or parts of it, is used for research in a
|
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% publication or if it is fully or partially rewritten for another
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% computing language the authors and institution should be acknowledged
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% in written form in the publication: “Data processing was carried out
|
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% using the “cSAXS matlab package” developed by the CXS group,
|
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% Paul Scherrer Institut, Switzerland.”
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% Variations on the latter text can be incorporated upon discussion with
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% the CXS group if needed to more specifically reflect the use of the package
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% for the published work.
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%
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% A publication that focuses on describing features, or parameters, that
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% are already existing in the code should be first discussed with the
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% authors.
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%
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% This code and subroutines are part of a continuous development, they
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% are provided “as they are” without guarantees or liability on part
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% of PSI or the authors. It is the user responsibility to ensure its
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%
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function sinogram = astra2matlab(sinogram)
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% simple function to reshape sinogram from ASTRA (C++) order to Matlab (FORTRAN) order
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if isnumeric(sinogram)
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[U,V,A] = size(sinogram);
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sinogram = permute(reshape(sinogram, [U,A,V]), [3,1,2]);
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elseif iscell(sinogram)
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for ii = 1:length(sinogram)
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sinogram{ii} = astra2matlab(sinogram{ii});
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end
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end
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end
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@@ -0,0 +1,52 @@
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% FUNCTION sinogram = astra2matlab(sinogram)
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% simple function to reshape sinogram from Matlab (FORTRAN) order to ASTRA (C++) order
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% Inputs:
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% sinogram - real value sinogram
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%*-----------------------------------------------------------------------*
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%| |
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%| Except where otherwise noted, this work is licensed under a |
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%| Creative Commons Attribution-NonCommercial-ShareAlike 4.0 |
|
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%| International (CC BY-NC-SA 4.0) license. |
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%| |
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%| Copyright (c) 2017 by Paul Scherrer Institute (http://www.psi.ch) |
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%| |
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%| Author: CXS group, PSI |
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%*-----------------------------------------------------------------------*
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% You may use this code with the following provisions:
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%
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% If the code is fully or partially redistributed, or rewritten in another
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% computing language this notice should be included in the redistribution.
|
||||
%
|
||||
% If this code, or subfunctions or parts of it, is used for research in a
|
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% publication or if it is fully or partially rewritten for another
|
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% computing language the authors and institution should be acknowledged
|
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% in written form in the publication: “Data processing was carried out
|
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% using the “cSAXS matlab package” developed by the CXS group,
|
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% Paul Scherrer Institut, Switzerland.”
|
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% Variations on the latter text can be incorporated upon discussion with
|
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% the CXS group if needed to more specifically reflect the use of the package
|
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% for the published work.
|
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%
|
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% A publication that focuses on describing features, or parameters, that
|
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% are already existing in the code should be first discussed with the
|
||||
% authors.
|
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%
|
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% This code and subroutines are part of a continuous development, they
|
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% are provided “as they are” without guarantees or liability on part
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% of PSI or the authors. It is the user responsibility to ensure its
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%
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function sinogram = matlab2astra(sinogram)
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if isnumeric(sinogram)
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[U,V,A] = size(sinogram);
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sinogram = reshape(permute(sinogram, [2,3,1]),[U,V,A]);
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elseif iscell(sinogram)
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for ii = 1:length(sinogram)
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sinogram{ii} = matlab2astra(sinogram{ii});
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end
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end
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end
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