bo-ptycho/TODO.md

TODO:

• fold_slice:
  • load diffractions / hdf5 files; change only param per job
  • restructure FoldSlicePtychoEngine.__init__() to load data but not params
    • write new prepare_data.m
  • start fold_slice from config.yaml instead of setup.txt
• BO train_x/y transfer between engines for single job
• metric() function(s) for each ptycho engine
  • FRC score
• separate config into bo_config and ptycho_config; let BOEngine have no knowledge of ptychography and vice versa.
• add GPU version of ExamplePtychoEngine
• change PtychoEngine.metric() to accept list of names and return dict
• GridSampler
  • .__init__() should create a grid
  • .ask() should remove those items from the grid
• change job.sub to job.sh
  • dynamic jobname
  • pre-check result directory

TODAY:

• change yaml schema, use stages in config-new.yaml
• separation of available GPUs and parallel sample batches
• prepare next batch for efficient GPU use