initial commit

config.yaml

@@ -0,0 +1,47 @@
+io:
+  input_data_path: '/home/swim/data/BTO_01_crop.mat'
+  result_dir: '/home/swim/Si_project/wrapper/results'
+  verbosity: 1
+
+ptycho:
+  engine: 'fold_slice'
+  path: '/home/swim/Si_project/lemon-ptychography/fold_slice'
+  params:
+    alpha_max: 30
+    defocus: -200
+    rot_ang: 1
+    Nlayers: 20
+    thickness: 250
+    voltage: 200
+    rbf: 37
+    Nprobe: 1
+    N_scan_x: 64
+    N_scan_y: 64
+    tilt_x: 2
+    tilt_y: 0 
+    scan_step_size: 0.36
+    Niter: 20
+    Niter_save_results: 10
+    CBED_size: 192
+    ADU: 1
+    extra_print_info: 'FIB'
+    scan_number: 1
+    gpu_id: 1
+    roi_label: '0_Ndp64'
+    diff_pattern_blur: 1
+    probe_change_start: 1
+    object_change_start: 1
+    grouping: 128
+    probe_posiiton_search: 1
+    regularize_layers: 0.1
+    variable_probe: 'false'
+
+bo:
+  parallel_jobs: 4
+  algorithm: ucb
+  params:
+    alpha_max:
+    defocus: 150
+    rot_ang: 1
+    Nlayers:
+    thickness: 150